Publications

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Metabolic Signatures of Acinetobacter baumannii and Klebsiella pneumoniae Infections in Acute-on-chronic Liver Failure

Published Date
Cadoli C, Arif S, Ballhorn W, et al
  • Camilla Cadoli
  • Sania Arif
  • Wibke Ballhorn
  • Angela Brieger
  • Maximilian Joseph Brol
  • Florence Castelli
  • Hans-Peter Erasmus
  • Julia Fischer
  • Robert Gurke
  • Lisa Hahnefeld
  • Christophe Junot
  • Nico Kraus
  • Cristina Ortiz
  • Robert Schierwagen
  • Sara Garcia Torres
  • Frank Erhard Uschner
  • Volker Müller
  • Jonel Trebicka
  • Christoph Welsch
  • Volkhard A.J. Kempf
Journal
Cellular and Molecular Gastroenterology and Hepatology

Human assembloids recapitulate periportal liver tissue in vitro

Published Date
Yuan L, Dawka S, Kim Y, et al
  • Lei Yuan
  • Sagarika Dawka
  • Yohan Kim
  • Anke Liebert
  • Fabian Rost
  • Robert Arnes-Benito
  • Franziska Baenke
  • Christina Götz
  • David Long Hin Tsang
  • Andrea Schuhmann
  • Anna Shevchenko
  • Roberta Rezende de Castro
  • Seunghee Kim
  • Aleksandra Sljukic
  • Anna M. Dowbaj
  • Andrej Shevchenko
  • Daniel Seehofer
  • Dongho Choi
  • Georg Damm
  • Daniel E. Stange
  • Meritxell Huch
Journal
Nature

NADPH oxidase 1/4 dual inhibition impairs transforming growth factor-beta protumorigenic effects in cholangiocarcinoma cancer-associated fibroblasts

Published Date
Amengual J, Gonzalez-Sanchez E, Yáñez-Bartolome M, et al
  • Josep Amengual
  • Ester Gonzalez-Sanchez
  • Mariana Yáñez-Bartolome
  • Laura Sererols-Viñas
  • Aashreya Ravichandra
  • Celia Guiton
  • Noel P. Fuste
  • Ania Alay
  • Sara Hijazo-Pechero
  • Beatriz Martín-Mur
  • Marta Gut
  • Anna Esteve-Codina
  • Ana Cantos-Cortes
  • Rut Espinosa-Sotelo
  • Emilio Ramos
  • Teresa Serrano
  • Mariona Calvo
  • Berta Laquente
  • Joana Ferrer
  • Gabriel Pons
  • Andrés Mendez-Lucas
  • Steven Dooley
  • Sumera I. Ilyas
  • Marie Vallette
  • Lynda Aoudjehane
  • Marie Lequoy
  • Laura Fouassier
  • Cédric Coulouarn
  • Silvia Affò
  • Alexander Scheiter
  • Diego F. Calvisi
  • Tian V. Tian
  • Isabel Fabregat
  • Javier Vaquero
Journal
Signal Transduction and Targeted Therapy

OmniPath: integrated knowledgebase for multi-omics analysis

Published Date
Türei D, Schaul J, Palacio-Escat N, et al
  • Dénes Türei
  • Jonathan Schaul
  • Nicolàs Palacio-Escat
  • Balázs Bohár
  • Yunfan Bai
  • Francesco Ceccarelli
  • Elif Çevrim
  • Macabe Daley
  • Melih Darcan
  • Daniel Dimitrov
  • Tunca Doğan
  • Daniel Domingo-Fernández
  • Aurelien Dugourd
  • Attila Gábor
  • Lejla Gul
  • Benjamin A Hall
  • Charles Tapley Hoyt
  • Olga Ivanova
  • Michal Klein
  • Toby Lawrence
  • Diego Mañanes
  • Dezső Módos
  • Sophia Müller-Dott
  • Márton Ölbei
  • Christina Schmidt
  • Bünyamin Şen
  • Fabian J Theis
  • Atabey Ünlü
  • Erva Ulusoy
  • Alberto Valdeolivas
  • Tamás Korcsmáros
  • Julio Saez-Rodriguez
Journal
Nucleic Acids Research

Diclofenac and acetaminophen dim the acute-phase response but amplify expression of the iron regulator hepcidin in liver cancer cells

Published Date
Zeilfelder A, Vanlier J, Mölders C, et al
  • Anja Zeilfelder
  • Joep Vanlier
  • Christina Mölders
  • Philipp Kastl
  • Barbara Helm
  • Sebastian Burbano de Lara
  • Till Möcklinghoff
  • Nantia Leonidou
  • Elisa Holstein
  • Artyom Vlasov
  • Alexander Held
  • Silvana Wilken
  • Katrin Hoffmann
  • Gerda Schicht
  • Andrea Scheffschick
  • Markella Katerinopoulou
  • Esther Giehl-Brown
  • Christoph Kahlert
  • Christoph Michalski
  • Daniel Seehofer
  • Georg Damm
  • Martina U. Muckenthaler
  • Marcel Schilling
  • Jens Timmer
  • Ursula Klingmüller
Journal
Cell Systems

Novel Ruthenacarborane–NSAID Conjugates

Published Date
Sonam S, Mojić M, Gordić V, et al
  • Sonam Sonam
  • Marija Mojić
  • Vuk Gordić
  • Markus Laube
  • Jonas Schädlich
  • Jens Pietzsch
  • Adrian Nicoara
  • Luiza Gaina
  • Sanja Mijatović
  • Danijela Maksimović-Ivanić
  • Goran N. Kaluđerović
  • Evamarie Hey-Hawkins
Journal
Molecules

Deep neural cellular Potts models

Published Date
Minartz K, D’Hondt T, Hillmann L, Starruß J, Brusch L, Menkovski V
  • Koen Minartz
  • Tim D’Hondt
  • Leon Hillmann
  • Jörn Starruß
  • Lutz Brusch
  • Vlado Menkovski
Journal

Comprehensive evaluation of phosphoproteomic-based kinase activity inference

Published Date
Müller-Dott S, Jaehnig EJ, Munchic KP, et al
  • Sophia Müller-Dott
  • Eric J. Jaehnig
  • Khoi Pham Munchic
  • Wen Jiang
  • Tomer M. Yaron-Barir
  • Sara R. Savage
  • Martin Garrido-Rodriguez
  • Jared L. Johnson
  • Alessandro Lussana
  • Evangelia Petsalaki
  • Jonathan T. Lei
  • Aurelien Dugourd
  • Karsten Krug
  • Lewis C. Cantley
  • D. R. Mani
  • Bing Zhang
  • Julio Saez-Rodriguez
Journal
Nature Communications

Targeting aldolase A in hepatocellular carcinoma leads to imbalanced glycolysis and energy stress due to uncontrolled FBP accumulation

Published Date
Snaebjornsson MT, Poeller P, Komkova D, et al
  • Marteinn T. Snaebjornsson
  • Philipp Poeller
  • Daria Komkova
  • Florian Röhrig
  • Lisa Schlicker
  • Alina M. Winkelkotte
  • Adriano B. Chaves-Filho
  • Kamal M. Al-Shami
  • Carolina Dehesa Caballero
  • Ioanna Koltsaki
  • Felix C. E. Vogel
  • Roberto Carlos Frias-Soler
  • Ramona Rudalska
  • Jessica D. Schwarz
  • Elmar Wolf
  • Daniel Dauch
  • Ralf Steuer
  • Almut Schulze
Journal
Nature Metabolism

The TGF-beta1 target WISP1 is highly expressed in liver cirrhosis and cirrhotic HCC microenvironment and involved in pro- and anti-tumorigenic effects.

Published Date
Dropmann A, Alex S, Schorn K, et al
  • A. Dropmann
  • S. Alex
  • K. Schorn
  • C. Tong
  • T. Caccamo
  • P. Godoy
  • I. Ilkavets
  • R. Liebe
  • D. Gonzalez
  • J. G. Hengstler
  • A. Piiper
  • L. Quagliata
  • M. S. Matter
  • O. Waidmann
  • F. Finkelmeier
  • T. Feng
  • T. S. Weiss
  • N. Rahbari
  • E. Birgin
  • E. Rasbach
  • S. Roessler
  • K. Breuhahn
  • M. Toth
  • M. P. Ebert
  • S. Dooley
  • S. Hammad
  • N. M. Meindl-Beinker
Journal
Biochem Biophys Res Commun

Hepatocellular Cancer Surveillance in Patients with Advanced Chronic Liver Disease.

Published Date
Gu W, de Lédinghen V, Aubé C, et al
  • W. Gu
  • V. de Ledinghen
  • C. Aube
  • A. Krag
  • C. Strassburg
  • L. Castera
  • J. Dumortier
  • M. Friedrich-Rust
  • S. Pol
  • I. Grgurevic
  • Y. Zeleke
  • M. Praktiknjo
  • R. Schierwagen
  • S. Klein
  • S. Francque
  • H. Gottfriedova
  • I. Sporea
  • P. Schindler
  • F. Rennebaum
  • M. J. Brol
  • M. Schulz
  • F. E. Uschner
  • J. Fischer
  • C. Margini
  • W. Wang
  • A. Delamarre
  • J. Best
  • A. Canbay
  • D. J. M. Bauer
  • B. Simbrunner
  • G. Semmler
  • T. Reiberger
  • J. Boursier
  • D. N. Rasmussen
  • V. Vilgrain
  • A. Guibal
  • S. Zeuzem
  • C. Vassord
  • L. Vonghia
  • R. Senkerikova
  • A. Popescu
  • A. Berzigotti
  • W. Laleman
  • M. Thiele
  • C. Jansen
  • J. Trebicka
Journal
NEJM Evid

Identification of PRMT5 as a therapeutic target in cholangiocarcinoma

Published Date
Elurbide J, Colyn L, Latasa MU, et al
  • Jasmin Elurbide
  • Leticia Colyn
  • Maria U Latasa
  • Iker Uriarte
  • Stefano Mariani
  • Amaya Lopez-Pascual
  • Emiliana Valbuena
  • Borja Castello-Uribe
  • Robert Arnes-Benito
  • Elena Adan-Villaescusa
  • Luz A Martinez-Perez
  • Mikel Azkargorta
  • Felix Elortza
  • Hanghang Wu
  • Marcin Krawczyk
  • Kai Markus Schneider
  • Bruno Sangro
  • Luca Aldrighetti
  • Francesca Ratti
  • Andrea Casadei Gardini
  • Jose J G Marin
  • Irene Amat
  • Jesus M Urman
  • Maria Arechederra
  • Maria Luz Martinez-Chantar
  • Christian Trautwein
  • Meritxell Huch
  • Francisco Javier Cubero
  • Carmen Berasain
  • Maite G Fernandez-Barrena
  • Matias A Avila
Journal
Gut

Comprehensive evaluation of phosphoproteomic-based kinase activity inference (preprint)

Published Date
Müller-Dott S, Jaehnig EJ, Munchic KP, et al
  • Sophia Müller-Dott
  • Eric J. Jaehnig
  • Khoi Pham Munchic
  • Wen Jiang
  • Tomer M. Yaron-Barir
  • Sara R. Savage
  • Martin Garrido-Rodriguez
  • Jared L. Johnson
  • Alessandro Lussana
  • Evangelia Petsalaki
  • Jonathan T. Lei
  • Aurélien Dugourd
  • Karsten Krug
  • Lewis C. Cantley
  • D. R. Mani
  • Bing Zhang
  • Julio Saez-Rodriguez
Journal
bioRxiv

Basal MET phosphorylation is an indicator of hepatocyte dysregulation in liver disease

Published Date
Burbano de Lara S, Kemmer S, Biermayer I, et al
  • Sebastian Burbano de Lara
  • Svenja Kemmer
  • Ina Biermayer
  • Svenja Feiler
  • Artyom Vlasov
  • Lorenza A D’Alessandro
  • Barbara Helm
  • Christina Mölders
  • Yannik Dieter
  • Ahmed Ghallab
  • Jan G Hengstler
  • Christiane Körner
  • Madlen Matz-Soja
  • Christina Götz
  • Georg Damm
  • Katrin Hoffmann
  • Daniel Seehofer
  • Thomas Berg
  • Marcel Schilling
  • Jens Timmer
  • Ursula Klingmüller
Journal
Molecular Systems Biology

Epidemiology of liver transplantation and post-LT complications in Germany: nationwide study (2005–2018)

Published Date
Gu W, Schaaf L, Hortlik H, et al
  • Wenyi Gu
  • Louisa Schaaf
  • Hannah Hortlik
  • Yasmin Zeleke
  • Maximilian J. Brol
  • Andreas A. Schnitzbauer
  • Wolf O. Bechstein
  • Stefan Zeuzem
  • Alexander Queck
  • Kai-Henrik Peiffer
  • Michael Tischendorf
  • Andreas Pascher
  • Wim Laleman
  • Michael Praktiknjo
  • Martin S. Schulz
  • Frank E. Uschner
  • Florian Rennebaum
  • Jonel Trebicka
Journal
European Journal of Gastroenterology & Hepatology

Use and outcome of TIPS in hospitalized patients in Germany: A Nationwide study (2007–2018)

Published Date
Gu W, Zeleke Y, Hortlik H, et al
  • Wenyi Gu
  • Yasmin Zeleke
  • Hannah Hortlik
  • Louisa Schaaf
  • Frank E. Uschner
  • Martin Schulz
  • Michael Tischendorf
  • Kai-Henrik Peiffer
  • Maximilian Joseph Brol
  • Markus Kimmann
  • Thomas Vogl
  • Michael Köhler
  • Carsten Meyer
  • Alexander Gerbes
  • Martin Rössle
  • Wim Laleman
  • Alexander Zipprich
  • Christian Steib
  • Michael Praktiknjo
  • Jonel Trebicka
  • German TIPS Working Group
Journal
Hepatology Communications

Myostatin is associated with the presence and development of acute-on-chronic liver failure

Published Date
Ruiz-Margáin A, Pohlmann A, Lanzerath S, et al
  • Astrid Ruiz-Margáin
  • Alessandra Pohlmann
  • Silke Lanzerath
  • Melanie Langheinrich
  • Alejandro Campos-Murguía
  • Berenice M. Román-Calleja
  • Robert Schierwagen
  • Sabine Klein
  • Frank Erhard Uschner
  • Maximilian Joseph Brol
  • Aldo Torre-Delgadillo
  • Nayelli C. Flores-García
  • Michael Praktiknjo
  • Ricardo U. Macías Rodríguez
  • Jonel Trebicka
Journal
JHEP Reports

Development, validation, and prognostic evaluation of a risk score for long-term liver-related outcomes in the general population: a multicohort study

Published Date
Serra-Burriel M, Juanola A, Serra-Burriel F, et al
  • Miquel Serra-Burriel
  • Adrià Juanola
  • Feliu Serra-Burriel
  • Maja Thiele
  • Isabel Graupera
  • Elisa Pose
  • Guillem Pera
  • Ivica Grgurevic
  • Llorenç Caballeria
  • Salvatore Piano
  • Laurens van Kleef
  • Mathias Reichert
  • Dominique Roulot
  • Juan M Pericàs
  • Jörn M Schattenberg
  • Emmanuel A Tsochatztis
  • Indra Neil Guha
  • Montserrat Garcia-Retortillo
  • Rosario Hernández
  • Jordi Hoyo
  • Matilde Fuentes
  • Carmen Expósito
  • Alba Martínez
  • Patricia Such
  • Anita Madir
  • Sönke Detlefsen
  • Marta Tonon
  • Andrea Martini
  • Ann T Ma
  • Judith Pich
  • Eva Bonfill
  • Marta Juan
  • Anna Soria
  • Marta Carol
  • Jordi Gratacós-Ginès
  • Rosa M Morillas
  • Pere Toran
  • J M Navarrete
  • Antoni Torrejón
  • Céline Fournier
  • Anne Llorca
  • Anita Arslanow
  • Harry J de Koning
  • Fernando Cucchietti
  • Michael Manns
  • Phillip N Newsome
  • Rubén Hernáez
  • Alina Allen
  • Paolo Angeli
  • Robert J de Knegt
  • Tom H Karlsen
  • Peter Galle
  • Vincent Wai-Sun Wong
  • Núria Fabrellas
  • Laurent Castera
  • Aleksander Krag
  • Frank Lammert
  • Patrick S Kamath
  • Pere Ginès
  • Marifé Alvarez
  • Peter Andersen
  • Paolo Angeli
  • Alba Ardèvol
  • Anita Arslanow
  • Luca Beggiato
  • Zahia Ben Abdesselam
  • Lucy Bennett
  • Bajiha Boutouria
  • Alessandra Brocca
  • M. Teresa Broquetas
  • Llorenç Caballeria
  • Valeria Calvino
  • Judith Camacho
  • Aura Capdevila
  • Marta Carol
  • Laurent Castera
  • Marta Cervera
  • Fernando Cucchietti
  • Anna de Fuentes
  • Rob de Knegt
  • Harry J de Koning
  • Sonke Detlefsen
  • Alba Diaz
  • José Diéguez Bande
  • Vanessa Esnault
  • Núria Fabrellas
  • Josep Lluis Falcó
  • Rosa Fernández
  • Céline Fournier
  • Matilde Fuentes
  • Peter Galle
  • Edgar García
  • Montserrat García-Retortillo
  • Esther Garrido
  • Pere Ginès
  • Rosa Gordillo Medina
  • Jordi Gratacós-Ginès
  • Isabel Graupera
  • Ivica Grgurevic
  • Indra Neil Guha
  • Eva Guix
  • Johanne Kragh Hansen
  • Rebecca Harris
  • Elena Hernández Boluda
  • Rosario Hernández-Ibañez
  • Jordi Hoyo
  • Arfan Ikram
  • Simone Incicco
  • Mads Israelsen
  • Marta Juan
  • Adrià Juanola
  • Ralf Kaiser
  • Patrick S Kamath
  • Tom H Karlsen
  • Maria Kjærgaard
  • Marko Korenjak
  • Aleksander Krag
  • Marcin Krawczyk
  • Philippe Laboulaye
  • Irina Lambert
  • Frank Lammert
  • Simon Langkjær Sørensen
  • Cristina Laserna-Jiménez
  • Sonia Lazaro Pi
  • Elsa Ledain
  • Vincent Levy
  • Katrine Prier Lindvig
  • Anne Llorca
  • Vanessa Londoño
  • Guirec Loyer
  • Ann T. Ma
  • Anita Madir
  • Michael Manns
  • Denise Marshall
  • M. Lluïsa Martí
  • Sara Martínez
  • Ricard Martínez Sala
  • Roser Masa-Font
  • Jane Møller Jensen
  • Rosa M Morillas
  • Laura Muñoz
  • Ruth Nadal
  • Laura Napoleone
  • JM Navarrete
  • Phillip N Newsome
  • Vibeke Nielsen
  • Martina Pérez
  • Juan Manuel Pericás-Pulido
  • Salvatore Piano
  • Judit Pich
  • Elisa Pose
  • Judit Presas Escobet
  • Matthias Reichert
  • Carlota Riba
  • Dominique Roulot
  • Ana Belén Rubio
  • Maria Sánchez-Morata
  • Jörn Schattenberg
  • Miquel Serra-Burriel
  • Feliu Serra-Burriel
  • Louise Skovborg Just
  • Milan Sonneveld
  • Anna Soria
  • Christiane Stern
  • Patricia Such
  • Maja Thiele
  • Marta Tonon
  • Pere Toran
  • Antoni Torrejón
  • Emmanuel A Tsochatzis
  • Laurens van Kleef
  • Paulien van Wijngaarden
  • Vanessa Velázquez
  • Ana Viu
  • Susanne Nicole Weber
  • Tracey Wildsmith
Journal
The Lancet

Sublethal necroptosis signaling promotes inflammation and liver cancer

Published Date
Vucur M, Ghallab A, Schneider AT, et al
  • Mihael Vucur
  • Ahmed Ghallab
  • Anne T. Schneider
  • Arlind Adili
  • Mingbo Cheng
  • Mirco Castoldi
  • Michael T. Singer
  • Veronika Büttner
  • Leonie S. Keysberg
  • Lena Küsgens
  • Marlene Kohlhepp
  • Boris Görg
  • Suchira Gallage
  • Jose Efren Barragan Avila
  • Kristian Unger
  • Claus Kordes
  • Anne-Laure Leblond
  • Wiebke Albrecht
  • Sven H. Loosen
  • Carolin Lohr
  • Markus S. Jördens
  • Anne Babler
  • Sikander Hayat
  • David Schumacher
  • Maria T. Koenen
  • Olivier Govaere
  • Mark V. Boekschoten
  • Simone Jörs
  • Carlos Villacorta-Martin
  • Vincenzo Mazzaferro
  • Josep M. Llovet
  • Ralf Weiskirchen
  • Jakob N. Kather
  • Patrick Starlinger
  • Michael Trauner
  • Mark Luedde
  • Lara R. Heij
  • Ulf P. Neumann
  • Verena Keitel
  • Johannes G. Bode
  • Rebekka K. Schneider
  • Frank Tacke
  • Bodo Levkau
  • Twan Lammers
  • Georg Fluegen
  • Theodore Alexandrov
  • Amy L. Collins
  • Glyn Nelson
  • Fiona Oakley
  • Derek A. Mann
  • Christoph Roderburg
  • Thomas Longerich
  • Achim Weber
  • Augusto Villanueva
  • Andre L. Samson
  • James M. Murphy
  • Rafael Kramann
  • Fabian Geisler
  • Ivan G. Costa
  • Jan G. Hengstler
  • Mathias Heikenwalder
  • Tom Luedde
Journal
Immunity

Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation

Published Date
Hammad S, Ogris C, Othman A, et al
  • Seddik Hammad
  • Christoph Ogris
  • Amnah Othman
  • Pia Erdoesi
  • Wolfgang Schmidt-Heck
  • Ina Biermayer
  • Barbara Helm
  • Yan Gao
  • Weronika Piorońska
  • Christian H. Holland
  • Lorenza A. D’Alessandro
  • Carolina de la Torre
  • Carsten Sticht
  • Sherin Al Aoua
  • Fabian J. Theis
  • Heike Bantel
  • Matthias P. Ebert
  • Ursula Klingmüller
  • Jan G. Hengstler
  • Steven Dooley
  • Nikola S. Mueller
Journal
Cell Death & Disease

Genetic variation in TERT modifies the risk of hepatocellular carcinoma in alcohol-related cirrhosis: results from a genome-wide case-control study

Published Date
Buch S, Innes H, Lutz PL, et al
  • Stephan Buch
  • Hamish Innes
  • Philipp Ludwig Lutz
  • Hans Dieter Nischalke
  • Jens U Marquardt
  • Janett Fischer
  • Karl Heinz Weiss
  • Jonas Rosendahl
  • Astrid Marot
  • Marcin Krawczyk
  • Markus Casper
  • Frank Lammert
  • Florian Eyer
  • Arndt Vogel
  • Silke Marhenke
  • Johann von Felden
  • Rohini Sharma
  • Stephen Rahul Atkinson
  • Andrew McQuillin
  • Jacob Nattermann
  • Clemens Schafmayer
  • Andre Franke
  • Christian Strassburg
  • Marcella Rietschel
  • Heidi Altmann
  • Stefan Sulk
  • Veera Raghavan Thangapandi
  • Mario Brosch
  • Carolin Lackner
  • Rudolf E Stauber
  • Ali Canbay
  • Alexander Link
  • Thomas Reiberger
  • Mattias Mandorfer
  • Georg Semmler
  • Bernhard Scheiner
  • Christian Datz
  • Stefano Romeo
  • Stefano Ginanni Corradini
  • William Lucien Irving
  • Joanne R Morling
  • Indra Neil Guha
  • Eleanor Barnes
  • M Azim Ansari
  • Jocelyn Quistrebert
  • Luca Valenti
  • Sascha A Müller
  • Marsha Yvonne Morgan
  • Jean-François Dufour
  • Jonel Trebicka
  • Thomas Berg
  • Pierre Deltenre
  • Sebastian Mueller
  • Jochen Hampe
  • Felix Stickel
Journal
Gut

Monitoring TGF-β1 effects on liver cells in vivo

Published Date
Hammad A, Hammad S, Gould K, Ebert MP, Dooley S, Dropmann A
  • Alaa Hammad
  • Seddik Hammad
  • Kerry Gould
  • Matthias P. Ebert
  • Steven Dooley
  • Anne Dropmann
Journal
39. Jahrestagung der Deutschen Arbeitsgemeinschaft zum Studium der Leber