Publications from 2024 | LiSyM Cancer

Published Date

2024-12-23

Ott F, Körner C, Krohn K, et al

Fritzi Ott
Christiane Körner
Knut Krohn
Janett Fischer
Georg Damm
Daniel Seehofer
Thomas Berg
Madlen Matz-Soja

Journal

Archives of Toxicology

Published Date

2024-12-21

Badia-i-Mompel P, Casals-Franch R, Wessels L, et al

Pau Badia-i-Mompel
Roger Casals-Franch
Lorna Wessels
Sophia Müller-Dott
Rémi Trimbour
Yunxiao Yang
Ricardo O. Ramirez Flores
Julio Saez-Rodriguez

Journal

preprint

Published Date

2024-12-16

Angendohr C, Missing L, Ehlting C, et al

Carolin Angendohr
Leah Missing
Christian Ehlting
Stephanie D. Wolf
Karl S. Lang
Mihael Vucur
Tom Luedde
Johannes G. Bode

Journal

PLOS ONE

Published Date

2024-11-19

Lussana A, Müller-Dott S, Saez-Rodriguez J, Petsalaki E

Alessandro Lussana
Sophia Müller-Dott
Julio Saez-Rodriguez
Evangelia Petsalaki

Journal

Bioinformatics

Published Date

2024-11-15

Bebelman MP, Belicova L, Gralinska E, et al

Maarten P. Bebelman
Lenka Belicova
Elzbieta Gralinska
Tobias Jumel
Aparajita Lahree
Sarah Sommer
Andrej Shevchenko
Timofei Zatsepin
Yannis Kalaidzidis
Martin Vingron
Marino Zerial

Journal

Development

Published Date

2024-11-08

Sonam S, Jelača S, Laube M, et al

Sonam Sonam
Sanja Jelača
Markus Laube
Jonas Schädlich
Jens Pietzsch
Danijela Maksimović‐Ivanić
Sanja Mijatović
Goran N. Kaluđerović
Evamarie Hey‐Hawkins

Journal

ChemMedChem

Published Date

2024-11-05

Dropmann A, Alex S, Schorn K, et al

A. Dropmann
S. Alex
K. Schorn
C. Tong
T. Caccamo
P. Godoy
I. Ilkavets
R. Liebe
D. Gonzalez
J. G. Hengstler
A. Piiper
L. Quagliata
M. S. Matter
O. Waidmann
F. Finkelmeier
T. Feng
T. S. Weiss
N. Rahbari
E. Birgin
E. Rasbach
S. Roessler
K. Breuhahn
M. Toth
M. P. Ebert
S. Dooley
S. Hammad
N. M. Meindl-Beinker

Journal

Biochem Biophys Res Commun

Published Date

2024-11-01

Hewitt KJ, Wiest IC, Carrero ZI, et al

Katherine J Hewitt
Isabella C Wiest
Zunamys I Carrero
Laura Bejan
Thomas O Millner
Sebastian Brandner
Jakob Nikolas Kather

Journal

The Journal of Pathology: Clinical Research

Published Date

2024-10-22

Wanes D, Aoua SA, Shammas H, et al

Dalanda Wanes
Sherin Al Aoua
Hadeel Shammas
Friederike Walters
Anibh M. Das
Sandra Rizk
Hassan Y. Naim

Journal

International Journal of Molecular Sciences

Published Date

2024-10-22

Gu W, de Lédinghen V, Aubé C, et al

W. Gu
V. de Ledinghen
C. Aube
A. Krag
C. Strassburg
L. Castera
J. Dumortier
M. Friedrich-Rust
S. Pol
I. Grgurevic
Y. Zeleke
M. Praktiknjo
R. Schierwagen
S. Klein
S. Francque
H. Gottfriedova
I. Sporea
P. Schindler
F. Rennebaum
M. J. Brol
M. Schulz
F. E. Uschner
J. Fischer
C. Margini
W. Wang
A. Delamarre
J. Best
A. Canbay
D. J. M. Bauer
B. Simbrunner
G. Semmler
T. Reiberger
J. Boursier
D. N. Rasmussen
V. Vilgrain
A. Guibal
S. Zeuzem
C. Vassord
L. Vonghia
R. Senkerikova
A. Popescu
A. Berzigotti
W. Laleman
M. Thiele
C. Jansen
J. Trebicka

Journal

NEJM Evid

Published Date

2024-10-18

Kulow VA, Roegner K, Labes R, et al

Vera A. Kulow
Kameliya Roegner
Robert Labes
Mumtaz Kasim
Susanne Mathia
Claudia S. Czopek
Nikolaus Berndt
Philipp N. Becker
Gohar Ter‐Avetisyan
Friedrich C. Luft
Philipp Enghard
Christian Hinze
Jan Klocke
Kai‐Uwe Eckardt
Kai M. Schmidt‐Ott
Pontus B. Persson
Christian Rosenberger
Michael Fähling

Journal

Acta Physiologica

Published Date

2024-10-16

Kraus N, Uschner FE, Moeslein M, et al

Nico Kraus
Frank Erhard Uschner
Magnus Moeslein
Robert Schierwagen
Wenyi Gu
Maximilian Joseph Brol
Eike Fürst
Inga Grünewald
Sophie Lotersztajn
Pierre-Emmanuel Rautou
Marta Duran-Güell
Roger Flores Costa
Joan Clària
Jonel Trebicka
Sabine Klein

Journal

Cells

Published Date

2024-10-01

Guo J, Krehl K, Safraou Y, et al

Jing Guo
Karolina Krehl
Yasmine Safraou
Iwona Wallach
Jürgen Braun
David Meierhofer
Ingolf Sack
Nikolaus Berndt

Journal

Heliyon

Published Date

2024-09-29

González D, Campos G, Pütter L, et al

Daniela González
Gisela Campos
Larissa Pütter
Adrian Friebel
Christian H. Holland
Leonhard Holländer
Ahmed Ghallab
Zaynab Hobloss
Maiju Myllys
Stefan Hoehme
Nadja M. Meindl-Beinker
Steven Dooley
Rosemarie Marchan
Thomas S. Weiss
Jan G. Hengstler
Patricio Godoy

Journal

Cells

Published Date

2024-09-26

Raman K, Kratochvíl M, Olivier BG, et al

Karthik Raman
Miroslav Kratochvíl
Brett G. Olivier
Matthias König
Pratyay Sengupta
Dinesh Kumar Kuppa Baskaran
Tung V N Nguyen
Daniel Lobo
St Elmo Wilken
Krishna Kumar Tiwari
Aswathy K. Raghu
Indumathi Palanikumar
Lavanya Raajaraam
Maziya Ibrahim
Sanjaay Balakrishnan
Shreyansh Umale
Frank Bergmann
Tanisha Malpani
Venkata P Satagopam
Reinhard Schneider
Moritz E. Beber
Sarah Keating
Mihail Anton
Alina Renz
Meiyappan Lakshmanan
Dong-Yup Lee
Lokanand Koduru
Reihaneh Mostolizadeh
Oscar Dias
Emanuel Cunha
Alexandre Oliveira
Yi Qing Lee
Karsten Zengler
Rodrigo Santibáñez-Palominos
Manish Kumar
Matteo Barberis
Bhanwar Lal Puniya
Tomáš Helikar
Hoang V. Dinh
Patrick F. Suthers
Costas D. Maranas
Isabella Casini
Seyed Babak Loghmani
Nadine Veith
Nantia Leonidou
Feiran Li
Yu Chen
Jens Nielsen
GaRyoung Lee
Sang Mi Lee
Gi Bae Kim
Pedro T. Monteiro
Miguel C. Teixeira
Hyun Uk Kim
Sang Yup Lee
Ulf W. Liebal
Lars M. Blank
Christian Lieven
Chaimaa Tarzi
Claudio Angione
Manga Enuh Blaise
Çelik Pınar Aytar
Mikhail Kulyashov
llya Akberdin
Dohyeon Kim
Sung Ho Yoon
Zhaohui Xu
Jyotshana Gautam
William T. Scott
Peter J. Schaap
Jasper J. Koehorst
Cristal Zuñiga
Gabriela Canto-Encalada
Sara Benito-Vaquerizo
Ivette Parera Olm
Maria Suarez-Diez
Qianqian Yuan
Hongwu Ma
Mohammad Mazharul Islam
Jason A. Papin
Francisco Zorrilla
Kiran Raosaheb Patil
Arianna Basile
Juan Nogales
Granado San León
Freddy Castillo-Alfonso
Roberto Olivares-Hernández
Gabriela Canto-Encalada
Gabriel Vigueras-Ramírez
Henning Hermjakob
Andreas Dräger
Rahuman S Malik-Sheriff

Journal

preprint

Published Date

2024-09-23

Leonidou N, Xia Y, Friedrich L, Schütz MS, Dräger A

Nantia Leonidou
Yufan Xia
Lea Friedrich
Monika S. Schütz
Andreas Dräger

Journal

PLOS Pathogens

Published Date

2024-09-13

Venturi A, Bona SD, Desantis J, et al

Andrea Venturi
Stefano Di Bona
Jenny Desantis
Michela Eleuteri
Matteo Bartalucci
Massimo Baroni
Paolo Benedetti
Laura Goracci
Gabriele Cruciani

Journal

Journal of Medicinal Chemistry

Published Date

2024-09-11

Elurbide J, Colyn L, Latasa MU, et al

Jasmin Elurbide
Leticia Colyn
Maria U Latasa
Iker Uriarte
Stefano Mariani
Amaya Lopez-Pascual
Emiliana Valbuena
Borja Castello-Uribe
Robert Arnes-Benito
Elena Adan-Villaescusa
Luz A Martinez-Perez
Mikel Azkargorta
Felix Elortza
Hanghang Wu
Marcin Krawczyk
Kai Markus Schneider
Bruno Sangro
Luca Aldrighetti
Francesca Ratti
Andrea Casadei Gardini
Jose J G Marin
Irene Amat
Jesus M Urman
Maria Arechederra
Maria Luz Martinez-Chantar
Christian Trautwein
Meritxell Huch
Francisco Javier Cubero
Carmen Berasain
Maite G Fernandez-Barrena
Matias A Avila

Journal

Gut

Published Date

2024-09-09

Zheng C, Li X, Lyu H, et al

C. Zheng
Xiaojia Li
H. Lyu
C. Chen
J. Mueller
A. Dropmann
S. Hammad
S. Dooley
S. He
S. Mueller

Journal

Hepat Med

Published Date

2024-08-08

Tashev SA, Euchner J, Yserentant K, et al

Stanimir Asenov Tashev
Jonas Euchner
Klaus Yserentant
Siegfried Hänselmann
Felix Hild
Wioleta Chmielewicz
Johan Hummert
Florian Schwörer
Nikolaos Tsopoulidis
Stefan Germer
Zoe Saßmannshausen
Oliver T. Fackler
Ursula Klingmüller
Dirk-Peter Herten

Journal

Nature Methods

Published Date

2024-08-01

Wang S, Link F, Munker S, et al

S. Wang
F. Link
S. Munker
W. Wang
R. Feng
R. Liebe
Y. Li
Y. Yao
H. Liu
C. Shao
M. P. A. Ebert
H. Ding
S. Dooley
H. L. Weng
S. S. Wang

Journal

Hepatol Commun

Published Date

2024-07-13

Schmithals C, Kakoschky B, Denk D, et al

C. Schmithals
B. Kakoschky
D. Denk
M. von Harten
J. H. Klug
E. Hintermann
A. Dropmann
E. Hamza
A. C. Jacomin
J. U. Marquardt
S. Zeuzem
P. Schirmacher
E. Herrmann
U. Christen
T. J. Vogl
O. Waidmann
S. Dooley
F. Finkelmeier
A. Piiper

Journal

EBioMedicine

Published Date

2024-07-02

Müller-Dott S, Jaehnig EJ, Munchic KP, et al

Sophia Müller-Dott
Eric J. Jaehnig
Khoi Pham Munchic
Wen Jiang
Tomer M. Yaron-Barir
Sara R. Savage
Martin Garrido-Rodriguez
Jared L. Johnson
Alessandro Lussana
Evangelia Petsalaki
Jonathan T. Lei
Aurélien Dugourd
Karsten Krug
Lewis C. Cantley
D. R. Mani
Bing Zhang
Julio Saez-Rodriguez

Journal

bioRxiv

Published Date

2024-06-04

Leonidou N, Ostyn L, Coenye T, Crabbé A, Dräger A

Nantia Leonidou
Lisa Ostyn
Tom Coenye
Aurélie Crabbé
Andreas Dräger

Journal

Microbiology Spectrum

Published Date

2024-05-04

Blank V, Karlas T, Anderegg U, et al

Valentin Blank
Thomas Karlas
Ulf Anderegg
Johannes Wiegand
Josi Arnold
Linnaeus Bundalian
Gabriela‐Diana Le Duc
Christiane Körner
Thomas Ebert
Anja Saalbach

Journal

Liver International

Published Date

2024-03-01

Jung YS, Radhakrishnan K, Hammad S, et al

Yoon Seok Jung
Kamalakannan Radhakrishnan
Seddik Hammad
Sebastian Müller
Johannes Müller
Jung-Ran Noh
Jina kim
In-Kyu Lee
Sung Jin Cho
Don-Kyu Kim
Yong-Hoon Kim
Chul-Ho Lee
Steven Dooley
Hueng-Sik Choi

Journal

Redox Biology

Published Date

2024-02-27

Mücke MM, Hernández‐Tejero M, Gu W, et al

Marcus M. Mücke
María Hernández‐Tejero
Wenyi Gu
Michael Kuhn
Malte Janz
Marisa I. Keller
Anthony Fullam
Laura Altepeter
Victoria T. Mücke
Fabian Finkelmeier
Katharina M. Schwarzkopf
Carla Cremonese
Peter‐Merton Hunyady
Myriam W. Heilani
Frank Erhard Uschner
Robert Schierwagen
Maximilian J. Brol
Julia Fischer
Sabine Klein
Kai‐Henrik Peiffer
Michael Hogardt
Saeed Shoaie
Minneke J. Coenraad
Jörg Bojunga
Vicente Arroyo
Stefan Zeuzem
Volkhard A. J. Kempf
Christoph Welsch
Wim Laleman
Peer Bork
Javier Fernandez
Jonel Trebicka
MICROB‐PREDICT and PREDICT Study Group of the EASL‐CLIF Consortium

Journal

Alimentary Pharmacology & Therapeutics

Published Date

2024-02-26

Bartimoccia S, Praktiknjo M, Nocella C, et al

Simona Bartimoccia
Michael Praktiknjo
Cristina Nocella
Robert Schierwagen
Vittoria Cammisotto
Christian Jansen
Luca Cristiano
Valentina Castellani
Johannes Chang
Roberto Carnevale
Sofia Maiucci
Frank Erhard Uschner
Pasquale Pignatelli
Maximilian Joseph Brol
Jonel Trebicka
Francesco Violi

Journal

Internal and Emergency Medicine

Published Date

2024-02-21

Helm B, Hansen P, Lai L, et al

Barbara Helm
Pauline Hansen
Li Lai
Luisa Schwarzmüller
Simone M. Clas
Annika Richter
Max Ruwolt
Fan Liu
Dario Frey
Lorenza A. D’Alessandro
Wolf-Dieter Lehmann
Marcel Schilling
Dominic Helm
Dorothea Fiedler
Ursula Klingmüller

Journal

bioRxiv

Published Date

2024-02-16

Zhao J, Ghallab A, Hassan R, Dooley S, Hengstler JG, Drasdo D

J. Zhao
A. Ghallab
R. Hassan
S. Dooley
J. G. Hengstler
D. Drasdo

Journal

iScience

Published Date

2024-02-05

Yuan L

Lei Yuan

Journal

Nature Reviews Molecular Cell Biology

Published Date

2024-02-01

Torp N, Israelsen M, Coenraad M, et al

Nikolaj Torp
Mads Israelsen
Minneke Coenraad
Maria Papp
Debbie Shawcross
Marko Korenjak
Paolo Angeli
Wim Laleman
Adria Juanola
Pere Gines
Jonel Trebicka
Aleksander Krag

Journal

BMJ Open

Published Date

2024-01-27

Moreto F, Garcia JL, Ferreira ALdA, et al

Fernando Moreto
Jéssica Leite Garcia
Ana Lúcia dos Anjos Ferreira
Silvia Radrezza
Mariane Róvero Costa
Guilherme Ribeiro Romualdo
Nubia Alves Grandini
Giancarlo Aldini
Camila Renata Correa
Alfonsina D'Amato

Journal

Journal of Biochemical and Molecular Toxicology

Published Date

2024-01-25

Peng X, Janićijević Ž, Lemm S, et al

Xuan Peng
Željko Janićijević
Sandy Lemm
Sandra Hauser
Michael Knobel
Jens Pietzsch
Michael Bachmann
Larysa Baraban

Journal

Advanced Healthcare Materials

Published Date

2024-01-12

Burbano de Lara S, Kemmer S, Biermayer I, et al

Sebastian Burbano de Lara
Svenja Kemmer
Ina Biermayer
Svenja Feiler
Artyom Vlasov
Lorenza A D’Alessandro
Barbara Helm
Christina Mölders
Yannik Dieter
Ahmed Ghallab
Jan G Hengstler
Christiane Körner
Madlen Matz-Soja
Christina Götz
Georg Damm
Katrin Hoffmann
Daniel Seehofer
Thomas Berg
Marcel Schilling
Jens Timmer
Ursula Klingmüller

Journal

Molecular Systems Biology

Published Date

2024-01-01

Wang S, Link F, Han M, et al

Sai Wang
Frederik Link
Mei Han
Roohi Chaudhary
Anastasia Asimakopoulos
Roman Liebe
Ye Yao
Seddik Hammad
Anne Dropmann
Marinela Krizanac
Claudia Rubie
Laura Kim Feiner
Matthias Glanemann
Matthias P.A. Ebert
Ralf Weiskirchen
Yoav I. Henis
Marcelo Ehrlich
Steven Dooley

Journal

Cellular and Molecular Gastroenterology and Hepatology

Published Date

2024-01-01

Feng R, Tong C, Lin T, et al

Rilu Feng
Chenhao Tong
Tao Lin
Hui Liu
Chen Shao
Yujia Li
Carsten Sticht
Kejia Kan
Xiaofeng Li
Rui Liu
Sai Wang
Shanshan Wang
Stefan Munker
Hanno Niess
Christoph Meyer
Roman Liebe
Matthias P. Ebert
Steven Dooley
Hua Wang
Huiguo Ding
Hong-Lei Weng

Journal

The American Journal of Pathology

Publications

Impact of Hedgehog modulators on signaling pathways in primary murine and human hepatocytes in vitro: insights into liver metabolism

Comparison and evaluation of methods to infer gene regulatory networks from multimodal single-cell data

Interleukin 1 β suppresses bile acid-induced BSEP expression via a CXCR2-dependent feedback mechanism

PhosX: data-driven kinase activity inference from phosphoproteomics experiments

Hepatocyte differentiation requires anisotropic expansion of bile canaliculi

Carborane Conjugates with Ibuprofen, Fenoprofen and Flurbiprofen: Synthesis, Characterization, COX Inhibition Potential and In Vitro Activity

The TGF-beta1 target WISP1 is highly expressed in liver cirrhosis and cirrhotic HCC microenvironment and involved in pro- and anti-tumorigenic effects.

Large language models as a diagnostic support tool in neuropathology

Rosa canina L. Methanol Extract and Its Component Rutin Reduce Cholesterol More Efficiently than Miglustat in Niemann–Pick C Fibroblasts

Hepatocellular Cancer Surveillance in Patients with Advanced Chronic Liver Disease.

Beyond hemoglobin: Critical role of 2,3‐bisphosphoglycerate mutase in kidney function and injury

Decompensated MASH-Cirrhosis Model by Acute and Toxic Effects of Phenobarbital

Pregnancy alters fatty acid metabolism, glucose regulation, and detoxification of the liver in synchrony with biomechanical property changes

Role of WISP1 in Stellate Cell Migration and Liver Fibrosis

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Exploring the metabolic profile of A. baumannii for antimicrobial development using genome-scale modeling

Between Theory and Practice: Computational/Experimental Integrated Approaches to Understand the Solubility and Lipophilicity of PROTACs

Identification of PRMT5 as a therapeutic target in cholangiocarcinoma

Direct Ingestion of Oxidized Red Blood Cells (Efferocytosis) by Hepatocytes.

ProDOL: a general method to determine the degree of labeling for staining optimization and molecular counting

Retinoic acid generates a beneficial microenvironment for liver progenitor cell activation in acute liver failure.

Tumour-specific activation of a tumour-blood transport improves the diagnostic accuracy of blood tumour markers in mice.

Comprehensive evaluation of phosphoproteomic-based kinase activity inference (preprint)

Genome-scale model of <i>Rothia mucilaginosa</i> predicts gene essentialities and reveals metabolic capabilities

Thy‐1 restricts steatosis and liver fibrosis in steatotic liver disease

ERRγ-inducible FGF23 promotes alcoholic liver injury through enhancing CYP2E1 mediated hepatic oxidative stress

Terlipressin therapy is associated with increased risk of colonisation with multidrug‐resistant bacteria in patients with decompensated cirrhosis

Association between endotoxemia and blood no in the portal circulation of cirrhotic patients: results of a pilot study

Lysis buffer selection guidance for mass spectrometry-based global proteomics including studies on the intersection of signal transduction and metabolism (preprint)

A liver digital twin for in silico testing of cellular and inter-cellular mechanisms in regeneration after drug-induced damage.

A dynamic culture system that models the intricacy of the mammary gland

Personalised human albumin in patients with cirrhosis and ascites: design and rationale for the ALB-TRIAL - a randomised clinical biomarker validation trial

Quantitative proteomics study of carnosine effect in an animal model of Western diet‐induced nonalcoholic fatty liver disease

Impact of Viscosity on Human Hepatoma Spheroids in Soft Core–Shell Microcapsules

Basal MET phosphorylation is an indicator of hepatocyte dysregulation in liver disease

The Interplay of TGF-β1 and Cholesterol Orchestrating Hepatocyte Cell Fate, EMT, and Signals for HSC Activation

Insulin Determines Transforming Growth Factor β Effects on Hepatocyte Nuclear Factor 4α Transcription in Hepatocytes